Improve parallel map
This commit is contained in:
parent
cab34de326
commit
d9e862af6b
9 changed files with 280 additions and 62 deletions
1
.vscode/settings.json
vendored
1
.vscode/settings.json
vendored
|
|
@ -23,6 +23,7 @@
|
|||
"levelname",
|
||||
"levelno",
|
||||
"matplotlib",
|
||||
"miniters",
|
||||
"Multinomial",
|
||||
"multiprocess",
|
||||
"nbconvert",
|
||||
|
|
|
|||
|
|
@ -20,12 +20,11 @@ packages = find:
|
|||
include_package_data = True
|
||||
python_requires = >=3.8
|
||||
install_requires =
|
||||
unidecode >= 1.3.0
|
||||
multiprocess >= 0.70.0.0
|
||||
tqdm >= 4.0.0
|
||||
scikit-learn
|
||||
matplotlib
|
||||
numpy
|
||||
tqdm >= 4.0.0
|
||||
unidecode >= 1.3.0
|
||||
syntok >= 1.4.0
|
||||
langcodes[data] >= 3.3.0
|
||||
langdetect >= 1.0.9
|
||||
|
|
@ -40,7 +39,8 @@ install_requires =
|
|||
uvicorn[standard] >= 0.18.0
|
||||
watchdog >= 2.1.0
|
||||
pymongo >= 3.0.0
|
||||
aiohttp >= 3.8.0
|
||||
dill >= 0.3.5.0
|
||||
aiohttp[speedups] >= 3.8.0
|
||||
|
||||
[options.package_data]
|
||||
* = *.conf, *.css
|
||||
|
|
|
|||
|
|
@ -1,52 +0,0 @@
|
|||
from math import ceil
|
||||
from typing import Any, Callable, Iterable, List, Optional
|
||||
|
||||
import multiprocess as mp
|
||||
from tqdm.cli import tqdm
|
||||
|
||||
from .logger import get_logger
|
||||
|
||||
logger = get_logger("parallel_map")
|
||||
|
||||
|
||||
def parallel_map(
|
||||
function: Callable[[Any], Any],
|
||||
values: Iterable[Any],
|
||||
chunk_size: Optional[int] = None,
|
||||
concurrency: Optional[int] = None,
|
||||
disable_progress: bool = False,
|
||||
) -> List[Any]:
|
||||
if concurrency is None:
|
||||
concurrency = mp.cpu_count()
|
||||
|
||||
assert concurrency > 0
|
||||
assert chunk_size is None or chunk_size > 0
|
||||
|
||||
values = list(values)
|
||||
|
||||
if not chunk_size:
|
||||
chunk_size = max(1, ceil(len(values) / concurrency / 10))
|
||||
|
||||
chunk_count = ceil(len(values) / chunk_size)
|
||||
if chunk_count < concurrency:
|
||||
logger.warning(
|
||||
f"Limiting concurrency to {chunk_count} because there are only {chunk_count} chunks"
|
||||
)
|
||||
concurrency = chunk_count
|
||||
|
||||
logger.info(
|
||||
f"Starting parallel map (concurrency: {concurrency}, chunk size: {chunk_size})"
|
||||
)
|
||||
|
||||
if concurrency == 1 or len(values) <= chunk_size:
|
||||
logger.warning("Running in series, there is no reason for parallelism")
|
||||
iterable = values if disable_progress else tqdm(values)
|
||||
return [function(v) for v in iterable]
|
||||
|
||||
with mp.Pool(processes=concurrency) as pool:
|
||||
if disable_progress:
|
||||
return pool.map(function, values, chunksize=chunk_size)
|
||||
|
||||
return list(
|
||||
tqdm(pool.imap(function, values, chunksize=chunk_size), total=len(values))
|
||||
)
|
||||
1
src/great_ai/utilities/parallel_map/__init__.py
Normal file
1
src/great_ai/utilities/parallel_map/__init__.py
Normal file
|
|
@ -0,0 +1 @@
|
|||
from .parallel_map import parallel_map
|
||||
62
src/great_ai/utilities/parallel_map/get_config.py
Normal file
62
src/great_ai/utilities/parallel_map/get_config.py
Normal file
|
|
@ -0,0 +1,62 @@
|
|||
import os
|
||||
from math import ceil
|
||||
from typing import Callable, Iterable, Optional, Sequence, Union
|
||||
|
||||
import dill
|
||||
|
||||
from ..logger import get_logger
|
||||
from .parallel_map_configuration import ParallelMapConfiguration
|
||||
|
||||
logger = get_logger("parallel_map")
|
||||
|
||||
|
||||
def get_config(
|
||||
*,
|
||||
function: Callable,
|
||||
input_values: Union[Sequence, Iterable],
|
||||
chunk_length: Optional[int],
|
||||
concurrency: Optional[int],
|
||||
) -> ParallelMapConfiguration:
|
||||
|
||||
is_input_sequence = hasattr(input_values, "__len__")
|
||||
|
||||
if concurrency is None:
|
||||
concurrency = len(os.sched_getaffinity(0))
|
||||
assert concurrency >= 1, "At least one mapper process has to be created"
|
||||
|
||||
if chunk_length is None:
|
||||
if is_input_sequence:
|
||||
chunk_length = max(1, ceil(len(input_values) / concurrency / 10))
|
||||
else:
|
||||
raise ValueError(
|
||||
"The argument for `values` does not implement `__len__`, therefore, you must provide a `chunk_length`"
|
||||
)
|
||||
assert chunk_length >= 1, "Chunks have to contain at least one element"
|
||||
|
||||
chunk_count: Optional[int] = None
|
||||
if is_input_sequence:
|
||||
chunk_count = ceil(len(input_values) / chunk_length)
|
||||
if chunk_count < concurrency:
|
||||
logger.warning(
|
||||
f"Limiting concurrency to {chunk_count} because there are only {chunk_count} chunks"
|
||||
)
|
||||
concurrency = chunk_count
|
||||
|
||||
if concurrency == 1:
|
||||
logger.warning("Running in series, there is no reason for parallelism")
|
||||
|
||||
input_length = len(input_values) if is_input_sequence else None
|
||||
|
||||
serialized_map_function = dill.dumps(function, byref=True, recurse=True)
|
||||
|
||||
logger.info("Parallel map: configured ✅")
|
||||
config = ParallelMapConfiguration(
|
||||
concurrency=concurrency,
|
||||
chunk_count=chunk_count,
|
||||
chunk_length=chunk_length,
|
||||
input_length=input_length,
|
||||
serialized_map_function=serialized_map_function,
|
||||
)
|
||||
|
||||
config.pretty_print()
|
||||
return config
|
||||
23
src/great_ai/utilities/parallel_map/mapper_function.py
Normal file
23
src/great_ai/utilities/parallel_map/mapper_function.py
Normal file
|
|
@ -0,0 +1,23 @@
|
|||
import multiprocessing as mp
|
||||
import queue
|
||||
|
||||
import dill
|
||||
|
||||
|
||||
def mapper_function(
|
||||
input_queue: mp.Queue,
|
||||
output_queue: mp.Queue,
|
||||
should_stop: mp.Event,
|
||||
serialized_map_function: bytes,
|
||||
):
|
||||
map_function = dill.loads(serialized_map_function)
|
||||
try:
|
||||
while not should_stop.is_set():
|
||||
try:
|
||||
input_chunk = input_queue.get_nowait()
|
||||
output_chunk = [(i, map_function(v)) for i, v in input_chunk]
|
||||
output_queue.put(output_chunk)
|
||||
except queue.Empty:
|
||||
pass
|
||||
except KeyboardInterrupt:
|
||||
return
|
||||
140
src/great_ai/utilities/parallel_map/parallel_map.py
Normal file
140
src/great_ai/utilities/parallel_map/parallel_map.py
Normal file
|
|
@ -0,0 +1,140 @@
|
|||
import multiprocessing as mp
|
||||
import queue
|
||||
from typing import (
|
||||
Callable,
|
||||
Iterable,
|
||||
List,
|
||||
Optional,
|
||||
Sequence,
|
||||
Tuple,
|
||||
TypeVar,
|
||||
overload,
|
||||
)
|
||||
|
||||
from tqdm.auto import tqdm
|
||||
|
||||
from ..chunk import chunk
|
||||
from .get_config import get_config
|
||||
from .mapper_function import mapper_function
|
||||
|
||||
T = TypeVar("T")
|
||||
V = TypeVar("V")
|
||||
|
||||
|
||||
@overload
|
||||
def parallel_map(
|
||||
function: Callable[[T], V],
|
||||
input_values: Sequence[T],
|
||||
*,
|
||||
chunk_length: Optional[int],
|
||||
concurrency: Optional[int],
|
||||
disable_progress_bar: bool,
|
||||
) -> List[V]:
|
||||
...
|
||||
|
||||
|
||||
@overload
|
||||
def parallel_map(
|
||||
function: Callable[[T], V],
|
||||
input_values: Iterable[T],
|
||||
*,
|
||||
chunk_length: int,
|
||||
concurrency: Optional[int],
|
||||
disable_progress_bar: bool,
|
||||
) -> List[V]:
|
||||
...
|
||||
|
||||
|
||||
def parallel_map(
|
||||
function,
|
||||
input_values,
|
||||
*,
|
||||
chunk_length=None,
|
||||
concurrency=None,
|
||||
disable_progress_bar=False,
|
||||
):
|
||||
config = get_config(
|
||||
function=function,
|
||||
input_values=input_values,
|
||||
chunk_length=chunk_length,
|
||||
concurrency=concurrency,
|
||||
)
|
||||
|
||||
if config.concurrency == 1:
|
||||
return [
|
||||
function(v)
|
||||
for v in tqdm(
|
||||
input_values,
|
||||
desc="Parallel map",
|
||||
disable=disable_progress_bar,
|
||||
total=config.input_length,
|
||||
miniters=1,
|
||||
)
|
||||
]
|
||||
|
||||
ctx = mp.get_context("spawn")
|
||||
ctx.freeze_support()
|
||||
input_queue = ctx.Queue(0 if config.chunk_count is None else config.chunk_count)
|
||||
output_queue = ctx.Queue(0 if config.chunk_count is None else config.chunk_count)
|
||||
should_stop = ctx.Event()
|
||||
|
||||
processes = [
|
||||
ctx.Process(
|
||||
name=f"parallel_map_{i}",
|
||||
target=mapper_function,
|
||||
kwargs=dict(
|
||||
input_queue=input_queue,
|
||||
output_queue=output_queue,
|
||||
should_stop=should_stop,
|
||||
serialized_map_function=config.serialized_map_function,
|
||||
),
|
||||
)
|
||||
for i in range(config.concurrency)
|
||||
]
|
||||
|
||||
for p in processes:
|
||||
p.start()
|
||||
|
||||
progress = tqdm(
|
||||
desc="Parallel map",
|
||||
disable=disable_progress_bar,
|
||||
total=config.input_length,
|
||||
miniters=1,
|
||||
)
|
||||
|
||||
chunks = iter(chunk(enumerate(input_values), chunk_length=config.chunk_length))
|
||||
indexed_results: List[Tuple[int, V]] = []
|
||||
read_input_length = 0
|
||||
is_iteration_over = False
|
||||
try:
|
||||
while not is_iteration_over or len(indexed_results) < read_input_length:
|
||||
if not is_iteration_over:
|
||||
try:
|
||||
next_chunk = next(chunks)
|
||||
input_queue.put(next_chunk)
|
||||
read_input_length += len(next_chunk)
|
||||
except StopIteration:
|
||||
is_iteration_over = True
|
||||
|
||||
try:
|
||||
result_chunk = output_queue.get_nowait()
|
||||
indexed_results.extend(result_chunk)
|
||||
progress.update(len(result_chunk))
|
||||
except queue.Empty:
|
||||
pass
|
||||
should_stop.set()
|
||||
except KeyboardInterrupt:
|
||||
for p in processes:
|
||||
p.terminate()
|
||||
finally:
|
||||
for p in processes:
|
||||
p.join()
|
||||
p.close()
|
||||
input_queue.close()
|
||||
output_queue.close()
|
||||
|
||||
progress.close()
|
||||
|
||||
results = [v for _, v in sorted(indexed_results)]
|
||||
|
||||
return results
|
||||
|
|
@ -0,0 +1,25 @@
|
|||
from typing import Optional
|
||||
|
||||
from pydantic import BaseModel
|
||||
|
||||
from ..logger import get_logger
|
||||
|
||||
logger = get_logger("parallel_map")
|
||||
|
||||
|
||||
class ParallelMapConfiguration(BaseModel):
|
||||
concurrency: int
|
||||
chunk_count: Optional[int]
|
||||
chunk_length: int
|
||||
input_length: Optional[int]
|
||||
serialized_map_function: bytes
|
||||
|
||||
def pretty_print(self, prefix=" ⚙️"):
|
||||
logger.info(f"{prefix} concurrency: {self.concurrency}")
|
||||
logger.info(f"{prefix} chunk length: {self.chunk_length}")
|
||||
logger.info(
|
||||
f"{prefix} chunk count: {self.chunk_count if self.chunk_count else 'unknown'}"
|
||||
)
|
||||
logger.info(
|
||||
f"{prefix} function size: {len(self.serialized_map_function) / 1024:.0f} kB"
|
||||
)
|
||||
|
|
@ -10,14 +10,28 @@ class TestParallelMap(unittest.TestCase):
|
|||
inputs = range(COUNT)
|
||||
expected = [v**2 for v in range(COUNT)]
|
||||
|
||||
assert parallel_map(lambda v: v**2, inputs) == expected
|
||||
assert parallel_map(lambda v: v**2, inputs, concurrency=10) == expected
|
||||
|
||||
def test_with_iterable(self) -> None:
|
||||
from time import sleep
|
||||
|
||||
def my_generator():
|
||||
for i in range(10):
|
||||
yield i
|
||||
sleep(0.1)
|
||||
|
||||
expected = [v**3 for v in range(10)]
|
||||
|
||||
assert (
|
||||
parallel_map(lambda x: x**3, my_generator(), chunk_length=1) == expected
|
||||
)
|
||||
|
||||
def test_simple_case_without_progress_bar(self) -> None:
|
||||
inputs = range(COUNT)
|
||||
expected = [v**2 for v in range(COUNT)]
|
||||
|
||||
self.assertEqual(
|
||||
parallel_map(lambda v: v**2, inputs, disable_progress=True), expected
|
||||
parallel_map(lambda v: v**2, inputs, disable_progress_bar=True), expected
|
||||
)
|
||||
|
||||
def test_simple_case_invalid_values(self) -> None:
|
||||
|
|
@ -27,16 +41,20 @@ class TestParallelMap(unittest.TestCase):
|
|||
AssertionError, parallel_map, lambda v: v**2, inputs, concurrency=0
|
||||
)
|
||||
self.assertRaises(
|
||||
AssertionError, parallel_map, lambda v: v**2, inputs, chunk_size=0
|
||||
AssertionError, parallel_map, lambda v: v**2, inputs, chunk_length=0
|
||||
)
|
||||
|
||||
def test_no_op(self) -> None:
|
||||
assert parallel_map(lambda v: v**2, [], disable_progress=True) == []
|
||||
assert parallel_map(lambda v: v**2, [], disable_progress_bar=True) == []
|
||||
self.assertEqual(
|
||||
parallel_map(lambda v: v**2, [], disable_progress=True, chunk_size=100),
|
||||
parallel_map(
|
||||
lambda v: v**2, [], disable_progress_bar=True, chunk_length=100
|
||||
),
|
||||
[],
|
||||
)
|
||||
self.assertEqual(
|
||||
parallel_map(lambda v: v**2, [], disable_progress=True, concurrency=100),
|
||||
parallel_map(
|
||||
lambda v: v**2, [], disable_progress_bar=True, concurrency=100
|
||||
),
|
||||
[],
|
||||
)
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue