Improve parallel map
This commit is contained in:
parent
cab34de326
commit
d9e862af6b
9 changed files with 280 additions and 62 deletions
1
.vscode/settings.json
vendored
1
.vscode/settings.json
vendored
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@ -23,6 +23,7 @@
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"levelname",
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"levelname",
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"levelno",
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"levelno",
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"matplotlib",
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"matplotlib",
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"miniters",
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"Multinomial",
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"Multinomial",
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"multiprocess",
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"multiprocess",
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"nbconvert",
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"nbconvert",
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@ -20,12 +20,11 @@ packages = find:
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include_package_data = True
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include_package_data = True
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python_requires = >=3.8
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python_requires = >=3.8
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install_requires =
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install_requires =
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unidecode >= 1.3.0
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multiprocess >= 0.70.0.0
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tqdm >= 4.0.0
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scikit-learn
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scikit-learn
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matplotlib
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matplotlib
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numpy
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numpy
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tqdm >= 4.0.0
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unidecode >= 1.3.0
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syntok >= 1.4.0
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syntok >= 1.4.0
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langcodes[data] >= 3.3.0
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langcodes[data] >= 3.3.0
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langdetect >= 1.0.9
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langdetect >= 1.0.9
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@ -40,7 +39,8 @@ install_requires =
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uvicorn[standard] >= 0.18.0
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uvicorn[standard] >= 0.18.0
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watchdog >= 2.1.0
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watchdog >= 2.1.0
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pymongo >= 3.0.0
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pymongo >= 3.0.0
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aiohttp >= 3.8.0
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dill >= 0.3.5.0
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aiohttp[speedups] >= 3.8.0
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[options.package_data]
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[options.package_data]
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* = *.conf, *.css
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* = *.conf, *.css
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@ -1,52 +0,0 @@
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from math import ceil
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from typing import Any, Callable, Iterable, List, Optional
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import multiprocess as mp
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from tqdm.cli import tqdm
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from .logger import get_logger
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logger = get_logger("parallel_map")
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def parallel_map(
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function: Callable[[Any], Any],
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values: Iterable[Any],
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chunk_size: Optional[int] = None,
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concurrency: Optional[int] = None,
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disable_progress: bool = False,
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) -> List[Any]:
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if concurrency is None:
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concurrency = mp.cpu_count()
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assert concurrency > 0
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assert chunk_size is None or chunk_size > 0
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values = list(values)
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if not chunk_size:
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chunk_size = max(1, ceil(len(values) / concurrency / 10))
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chunk_count = ceil(len(values) / chunk_size)
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if chunk_count < concurrency:
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logger.warning(
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f"Limiting concurrency to {chunk_count} because there are only {chunk_count} chunks"
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)
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concurrency = chunk_count
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logger.info(
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f"Starting parallel map (concurrency: {concurrency}, chunk size: {chunk_size})"
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)
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if concurrency == 1 or len(values) <= chunk_size:
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logger.warning("Running in series, there is no reason for parallelism")
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iterable = values if disable_progress else tqdm(values)
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return [function(v) for v in iterable]
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with mp.Pool(processes=concurrency) as pool:
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if disable_progress:
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return pool.map(function, values, chunksize=chunk_size)
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return list(
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tqdm(pool.imap(function, values, chunksize=chunk_size), total=len(values))
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)
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1
src/great_ai/utilities/parallel_map/__init__.py
Normal file
1
src/great_ai/utilities/parallel_map/__init__.py
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@ -0,0 +1 @@
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from .parallel_map import parallel_map
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62
src/great_ai/utilities/parallel_map/get_config.py
Normal file
62
src/great_ai/utilities/parallel_map/get_config.py
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@ -0,0 +1,62 @@
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import os
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from math import ceil
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from typing import Callable, Iterable, Optional, Sequence, Union
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import dill
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from ..logger import get_logger
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from .parallel_map_configuration import ParallelMapConfiguration
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logger = get_logger("parallel_map")
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def get_config(
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*,
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function: Callable,
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input_values: Union[Sequence, Iterable],
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chunk_length: Optional[int],
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concurrency: Optional[int],
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) -> ParallelMapConfiguration:
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is_input_sequence = hasattr(input_values, "__len__")
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if concurrency is None:
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concurrency = len(os.sched_getaffinity(0))
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assert concurrency >= 1, "At least one mapper process has to be created"
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if chunk_length is None:
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if is_input_sequence:
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chunk_length = max(1, ceil(len(input_values) / concurrency / 10))
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else:
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raise ValueError(
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"The argument for `values` does not implement `__len__`, therefore, you must provide a `chunk_length`"
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)
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assert chunk_length >= 1, "Chunks have to contain at least one element"
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chunk_count: Optional[int] = None
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if is_input_sequence:
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chunk_count = ceil(len(input_values) / chunk_length)
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if chunk_count < concurrency:
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logger.warning(
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f"Limiting concurrency to {chunk_count} because there are only {chunk_count} chunks"
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)
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concurrency = chunk_count
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if concurrency == 1:
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logger.warning("Running in series, there is no reason for parallelism")
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input_length = len(input_values) if is_input_sequence else None
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serialized_map_function = dill.dumps(function, byref=True, recurse=True)
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logger.info("Parallel map: configured ✅")
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config = ParallelMapConfiguration(
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concurrency=concurrency,
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chunk_count=chunk_count,
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chunk_length=chunk_length,
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input_length=input_length,
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serialized_map_function=serialized_map_function,
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)
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config.pretty_print()
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return config
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23
src/great_ai/utilities/parallel_map/mapper_function.py
Normal file
23
src/great_ai/utilities/parallel_map/mapper_function.py
Normal file
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@ -0,0 +1,23 @@
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import multiprocessing as mp
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import queue
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import dill
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def mapper_function(
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input_queue: mp.Queue,
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output_queue: mp.Queue,
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should_stop: mp.Event,
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serialized_map_function: bytes,
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):
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map_function = dill.loads(serialized_map_function)
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try:
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while not should_stop.is_set():
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try:
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input_chunk = input_queue.get_nowait()
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output_chunk = [(i, map_function(v)) for i, v in input_chunk]
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output_queue.put(output_chunk)
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except queue.Empty:
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pass
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except KeyboardInterrupt:
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return
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140
src/great_ai/utilities/parallel_map/parallel_map.py
Normal file
140
src/great_ai/utilities/parallel_map/parallel_map.py
Normal file
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@ -0,0 +1,140 @@
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import multiprocessing as mp
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import queue
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from typing import (
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Callable,
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Iterable,
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List,
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Optional,
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Sequence,
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Tuple,
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TypeVar,
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overload,
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)
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from tqdm.auto import tqdm
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from ..chunk import chunk
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from .get_config import get_config
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from .mapper_function import mapper_function
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T = TypeVar("T")
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V = TypeVar("V")
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@overload
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def parallel_map(
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function: Callable[[T], V],
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input_values: Sequence[T],
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*,
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chunk_length: Optional[int],
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concurrency: Optional[int],
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disable_progress_bar: bool,
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) -> List[V]:
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...
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@overload
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def parallel_map(
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function: Callable[[T], V],
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input_values: Iterable[T],
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*,
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chunk_length: int,
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concurrency: Optional[int],
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disable_progress_bar: bool,
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) -> List[V]:
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...
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def parallel_map(
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function,
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input_values,
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*,
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chunk_length=None,
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concurrency=None,
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disable_progress_bar=False,
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):
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config = get_config(
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function=function,
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input_values=input_values,
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chunk_length=chunk_length,
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concurrency=concurrency,
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)
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if config.concurrency == 1:
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return [
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function(v)
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for v in tqdm(
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input_values,
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desc="Parallel map",
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disable=disable_progress_bar,
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total=config.input_length,
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miniters=1,
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)
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]
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ctx = mp.get_context("spawn")
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ctx.freeze_support()
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input_queue = ctx.Queue(0 if config.chunk_count is None else config.chunk_count)
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output_queue = ctx.Queue(0 if config.chunk_count is None else config.chunk_count)
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should_stop = ctx.Event()
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processes = [
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ctx.Process(
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name=f"parallel_map_{i}",
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target=mapper_function,
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kwargs=dict(
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input_queue=input_queue,
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output_queue=output_queue,
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should_stop=should_stop,
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serialized_map_function=config.serialized_map_function,
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),
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)
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for i in range(config.concurrency)
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]
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for p in processes:
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p.start()
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progress = tqdm(
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desc="Parallel map",
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disable=disable_progress_bar,
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total=config.input_length,
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miniters=1,
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)
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chunks = iter(chunk(enumerate(input_values), chunk_length=config.chunk_length))
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indexed_results: List[Tuple[int, V]] = []
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read_input_length = 0
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is_iteration_over = False
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try:
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while not is_iteration_over or len(indexed_results) < read_input_length:
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if not is_iteration_over:
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try:
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next_chunk = next(chunks)
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input_queue.put(next_chunk)
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read_input_length += len(next_chunk)
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except StopIteration:
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is_iteration_over = True
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try:
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result_chunk = output_queue.get_nowait()
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indexed_results.extend(result_chunk)
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progress.update(len(result_chunk))
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except queue.Empty:
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pass
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should_stop.set()
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except KeyboardInterrupt:
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for p in processes:
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p.terminate()
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finally:
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for p in processes:
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p.join()
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p.close()
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input_queue.close()
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output_queue.close()
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progress.close()
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results = [v for _, v in sorted(indexed_results)]
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return results
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@ -0,0 +1,25 @@
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from typing import Optional
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from pydantic import BaseModel
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from ..logger import get_logger
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logger = get_logger("parallel_map")
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class ParallelMapConfiguration(BaseModel):
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concurrency: int
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chunk_count: Optional[int]
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chunk_length: int
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input_length: Optional[int]
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serialized_map_function: bytes
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def pretty_print(self, prefix=" ⚙️"):
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logger.info(f"{prefix} concurrency: {self.concurrency}")
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logger.info(f"{prefix} chunk length: {self.chunk_length}")
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logger.info(
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f"{prefix} chunk count: {self.chunk_count if self.chunk_count else 'unknown'}"
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)
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logger.info(
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f"{prefix} function size: {len(self.serialized_map_function) / 1024:.0f} kB"
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)
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@ -10,14 +10,28 @@ class TestParallelMap(unittest.TestCase):
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inputs = range(COUNT)
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inputs = range(COUNT)
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expected = [v**2 for v in range(COUNT)]
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expected = [v**2 for v in range(COUNT)]
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assert parallel_map(lambda v: v**2, inputs) == expected
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assert parallel_map(lambda v: v**2, inputs, concurrency=10) == expected
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def test_with_iterable(self) -> None:
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from time import sleep
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def my_generator():
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for i in range(10):
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yield i
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sleep(0.1)
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expected = [v**3 for v in range(10)]
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assert (
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parallel_map(lambda x: x**3, my_generator(), chunk_length=1) == expected
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)
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def test_simple_case_without_progress_bar(self) -> None:
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def test_simple_case_without_progress_bar(self) -> None:
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inputs = range(COUNT)
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inputs = range(COUNT)
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expected = [v**2 for v in range(COUNT)]
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expected = [v**2 for v in range(COUNT)]
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self.assertEqual(
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self.assertEqual(
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parallel_map(lambda v: v**2, inputs, disable_progress=True), expected
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parallel_map(lambda v: v**2, inputs, disable_progress_bar=True), expected
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)
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)
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def test_simple_case_invalid_values(self) -> None:
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def test_simple_case_invalid_values(self) -> None:
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@ -27,16 +41,20 @@ class TestParallelMap(unittest.TestCase):
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AssertionError, parallel_map, lambda v: v**2, inputs, concurrency=0
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AssertionError, parallel_map, lambda v: v**2, inputs, concurrency=0
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)
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)
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self.assertRaises(
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self.assertRaises(
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AssertionError, parallel_map, lambda v: v**2, inputs, chunk_size=0
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AssertionError, parallel_map, lambda v: v**2, inputs, chunk_length=0
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)
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)
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def test_no_op(self) -> None:
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def test_no_op(self) -> None:
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assert parallel_map(lambda v: v**2, [], disable_progress=True) == []
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assert parallel_map(lambda v: v**2, [], disable_progress_bar=True) == []
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self.assertEqual(
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self.assertEqual(
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parallel_map(lambda v: v**2, [], disable_progress=True, chunk_size=100),
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parallel_map(
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||||||
|
lambda v: v**2, [], disable_progress_bar=True, chunk_length=100
|
||||||
|
),
|
||||||
[],
|
[],
|
||||||
)
|
)
|
||||||
self.assertEqual(
|
self.assertEqual(
|
||||||
parallel_map(lambda v: v**2, [], disable_progress=True, concurrency=100),
|
parallel_map(
|
||||||
|
lambda v: v**2, [], disable_progress_bar=True, concurrency=100
|
||||||
|
),
|
||||||
[],
|
[],
|
||||||
)
|
)
|
||||||
|
|
|
||||||
Loading…
Add table
Add a link
Reference in a new issue